It can be challenging to bring people around to the concept of a clean protein powder, at least when the topic is first introduced. Years ago, it would have been considered a major win for you if you began to regularly take a protein powder or protein supplement of any kind.
If this is how you were introduced to protein supplementation, the notion that you might need to further alter your approach to acquiring enough protein by placing your supplements under another layer of scrutiny might sound like an unnecessary step. However, once the thought process behind the creation of clean protein powder is explained, and the factors that necessitated its emergence are presented, you will probably recognize why most protein powders aren’t as healthy as they first appear.
So with that in mind, let’s delve deeper into clean protein powder, and the painstaking steps that the makers of dietary supplements take to create it. Along with this, we’ll also explain what makes clean protein the best protein powder option available on the market, and what it does that average protein powder is incapable of replicating.
1. What Does Clean Protein Powder Mean?
The basic concept of a clean protein powder is that it is “cleaner” than protein powder that comes from other sources. Generally speaking, this means that clean protein comes from a clean protein source, and also contains no ingredients that are likely to be regarded as impure.
This definition may sound like an oversimplification, and a strong argument could be made that it is, but the insufficiency of the basic explanation is only owed to the surprising number of artificial elements contained with what was probably advertised to be a simple protein powder that is now sitting in your kitchen cabinet.
No Artificial Sweeteners, Colors, Preservatives, or Fillers
Given the prevalence of artificial ingredients in processed foods, it probably won’t surprise you in the least bit that the majority of protein powders contain artificial sweeteners, artificial dyes, and a host of artificial flavors capable of transforming a generic whey protein powder into a concoction that tastes like tropical fruits.
In addition, most protein powders are chock full of preservatives and other fillers that are common in the food industry. While they may help to extend the shelf-stability of the protein powder, they certainly aren’t doing any favors for your health, and may actually be harmful in the long run.
Minimal Ingredients You Can Pronounce
Part and parcel to filling a protein powder with artificial ingredients is the artificiality of the names of the ingredients included in the mixture. Most protein powders have a list of ingredients that sound like they were cooked up in a lab by a high-level food scientist.
While this may have been sold as a normal and possibly futuristic feature of civilized nutrition at one point or another, the human body has a preference for things that it can easily recognize as food. If your eyes don’t recognize an ingredient as an unmistakable source of food, your body probably won’t either.
Derived from High-Quality Sources
In order for something to truly be a clean protein powder, it realistically needs to be created from a clean protein source. When we’re talking about a clean whey protein, it would ideally be a grass-fed whey protein source from grass-fed cows. A plant-based protein would be expected to be an organic protein powder created from organic plants.
As we will discuss later, the subject of organic protein powder is a particularly dicey one, because lab testing has shown that under most circumstances, an organic protein powder is actually more likely to test positive for contaminants like heavy metals than non-organic protein powders.
While this finding may fly in the face of expectations, it further underscores the necessity of taking a three-dimensional approach to evaluating the cleanliness of protein content, because the origin of a protein may ultimately leave you with a false impression of its cleanliness if the final product doesn’t hold up under scrutiny.
Easily Digestible with Transparent Labeling
Ultimately, the reason behind the development of clean protein powder, on top of providing the consumer with the healthiest way to achieve their protein intake, is to offer a product that is easily digested, and that hides no substances that are potentially harmful beneath its label.
Many protein powders include digestive enzymes in their formulas to make them easier for their customers to digest. This is partially due to the complexity of their ingredients necessitating the inclusion of these digestive enzymes. In an ideal scenario, your protein powder will be composed of high quality protein and other ingredients that are already easy to digest, and that don’t require the intervention of digestive enzymes to help your body process them.
2. Common Additives Found in Conventional Protein Powders
Most protein powders — even protein powders marketed as organic protein powder or grass-fed whey protein powder — are loaded with additives that do not contribute to the primary purpose behind supplementing with protein powder.
By definition, additives are placed in food to improve or preserve it, but it’s debatable whether or not these artificial ingredients accomplish what they intend, at least with respect to the presumptions inherent within the term “improve.”
Artificial Sweeteners
For the sake of making the consumption of protein powder more pleasant and keeping the caloric content to a minimum, many protein supplements are loaded with artificial sweeteners.
Sucralose, aspartame, acesulfame potassium, sugar alcohols, and other sweeteners are essentially ignored by your digestive system, allowing them to pass through without adding to your pure caloric intake.
However, the problem with these sweeteners is that they may be doing other types of damage to your body even if they’re not directly contributing to unhealthy weight gain.
It’s true that no definitive link has been made between artificial sweeteners and the development of cancer. However, these sweeteners have been linked to a host of other health concerns, including cardiovascular disease. (1) They have also been hypothesized to alter and limit the functioning of the digestive system, compromising its ability to efficiently digest ordinary food. (2)
Artificial Flavors
In addition to artificial sweeteners, there are also artificial flavors, which are synthetic versions of familiar flavors that do not come from identifiable food sources. In contrast, all natural flavors come from either an identifiable plant or animal source, but artificial flavors are produced from chemicals intended to replicate the intended flavors.
Two clear examples of this are chocolate flavor and vanilla flavor. These two flavors are easily attained through natural means cocoa powder and vanilla extract, respectively. Therefore it seems counterintuitive to take something as fundamentally pure as a grass-fed whey protein powder and add a vanilla flavor to it through the use of artificial flavors.
Moreover, it just so happens that chocolate protein powder has one of the highest contamination rates on average. This isn’t to say that every chocolate protein powder has been adulterated in some way, but there does seem to be a link between the addition of artificial chocolate flavor to protein powder and the elevated likelihood of contamination.
Artificial Colors/Dyes
While we’re on the topic of flavors, most people expect a chocolate protein powder to have a brown coloring, and a protein powder with vanilla flavor to have a light beige to lily white color. In keeping with this expectation, a chocolate peanut butter protein powder will probably take on a shade in the middle of the spectrum between chocolate and vanilla.
While it’s very easy for whey protein powder to achieve these colors from natural ingredients, many manufacturers manipulate the colors of protein powder through the use of artificial colors and dyes. Yes, these artificial colors have been deemed generally safe for consumption, but the long-term judgement on them has been inconclusive, and they have been linked to hyperactivity and other problems in children. (3)
Frankly, of all the additives in protein powder, artificial coloring is the least justifiable. It only contributes to the appearance of your protein shake, and influences how it looks when it’s all blended together inside of a shaker bottle filled with almond milk. Even if it looks more appealing, it does nothing to address primary concerns, like the presence of essential amino acids, or the ability of the protein powder to expedite lean muscle growth.
Excessive Sugars
One of the major dangers of protein powders that people rarely think about while they’re in the pursuit of increased muscle size is added sugars. When you look at the label of whey protein concentrate and prioritize only the amount of protein per serving, they can overlook the sugar per serving, and that can have disastrous consequences.
There is a tradition in muscle building of “dirty bulking,” where the content of your diet is irrelevant as long as you’re able to pile on lean muscle tissue while gaining weight. Still, if one of your fitness goals is weight loss, the presence of added sugars in your chocolate protein powder can prove to be a major setback, essentially turning a protein shake into a bottle of chocolate milk.
An ideal protein powder will provide the bare minimum amount of sugar required to make it palatable, nourishing your muscles without setting back your weight loss goals.
Thickeners or Gums
It’s very common for powdered food products to have thickeners like carrageenan and xanthan gum added to them in order to provide them with a creamy texture. Rationally, these additives are heavily processed and created from sources like seaweed, which don’t belong anywhere near a product that should be primarily a byproduct of milk, or a plant-based source.
The same sort of creamy texture you’re looking for can be achieved by mixing your protein powder with something like almond milk, which provides natural creaminess without the same degree of artificiality or processing. However, if you fine that you’ve got a derivative of seaweed on the ingredient list of your protein powder, you probably need to get a new protein powder.

3. Ingredients to Look for in a Clean Protein Powder
As we’ve already mentioned, a clean protein source should have a few defining traits, and one of them is the caliber of the ingredients that are included in them. In order for a protein powder to qualify as clean, there are specific ingredients that it should possess, and they should all fall within certain parameters.
Single-Source Proteins
If your protein powder is a single source protein, that means the circumstances of its creation are easily identified and traced. Grass-fed whey protein powder is going to be traceable to specific dairies, while a plant-based protein powder made of organic pea protein, brown rice protein, or even chia seed protein is also capable of being traced to its agricultural source.
The key here is that your protein powder is able to follow a clear path from its point of origin straight through the processing phase and into your protein shake, so there’s no mistaking what the core ingredient in your protein powder is, or where it originated.
Natural or Organic Flavoring
As attractive as many exotic varieties of protein powder may sound, the majority of them are produced through the use of artificial flavors. For the sake of your digestive comfort and general health, your protein powder should include only natural flavors that are extracted from easily recognized sources.
An easy example of this would be a flavor like chocolate peanut butter, as both a peanut butter and chocolate flavor are easily attainable from natural sources, and can have their flavors preserved in the final product without compromising ingredient quality. Therefore, please be cognizant of whether or not your protein powder is composed of ingredients from sources that can be classified as natural, and that therefore imbue your supplement with natural flavors.
Short Ingredient Lists
If your protein powder possesses more than seven ingredients, then it should set off some alarm bells. Aside from a protein source like grass-fed whey protein isolate, your protein supplement might include a few ingredients that serve as natural flavors to make the product enticing, and a natural sweetener like stevia extract.
Once you get too far beyond this short list, you really begin to tamper with the cleanliness of the product, and you also need to question the intent behind the inclusion of the other ingredients, along with their necessity.
4. Certifications That Matter
To be completely honest, unless there’s some sort of certification going on behind the scenes, the labels on food containers are only worth so much. Whether the label says that it’s grass-fed whey protein isolate, organic vegan protein powder, or brown rice protein of the highest quality, none of that truly matters unless there is some organization or agency capable of verifying the truth of those declarations.
To put it another way, not only do you need to know that your pea protein is truly organic, and that someone can vouch for that fact, but you also need to know that it is actually a high quality protein powder in terms of its ability to ensure your long term safety. This means that your favorite plant protein also needs to be without contaminants if it ever wants to be able to make a claim to being the best protein powder for you.
USDA Organic
Especially when it comes to plant-based protein powder, the organic label is a very important selling point. However, what is often seen as a mark of purity for something like a vegan protein powder may actually be an indicator of the opposite in most cases, because 79 percent of tested organic protein powders were found to contain significant contaminants, like lead and other heavy metals.
While much of this may stem from the very process by which organic foods are produced, including the content of the soil, a portion of it is likely to result from the confusing labeling of organic protein powder, and of organic products in general.
The lowest tier of organic food creation is “specific organic ingredients.” That’s when a product like a plant-based protein blend is produced with less than 70 percent organic content. Next, there’s the “made with organic ingredients label.” While this guarantees that your vegan protein powder contains a minimum of 70 percent organic contents, it does not account for the remaining 30 percent.
When you see that a plant-based protein source has the “USDA organic” label on its packaging, you can rest assured that the U.S. Department of Agriculture has verified that your favorite organic protein powder has been made with at least 95 percent organic ingredients.
As you can see, this organic certification in no way ensures that your protein powder is free from heavy metals or other contaminants. All the same it’s certainly a good start, and a sign that some standard of quality has been upheld.
Non-GMO Project Verified
If your protein powder is a non-GMO product, it means that it was made from ingredients that are not genetically modified organisms, or that have not had their DNA genetically modified in a lab.
The foundation of the GMO term refers to crops that have been modified to resist herbicide, or to internally produce their own insecticide to ward off pests. The use of GMOs in this manner is wide-ranging, because they are used to produce plenty of grains and vegetables like rice and peas, while also producing ingredients that cows and other farm animals feed upon.
So when it comes to the selection of protein powder, the consumption of grass-fed whey protein isolate theoretically eliminates the possibility that the cows that produced the milk used to create the whey isolate were fed GMO grains… although there are such things as GMO grasses, which adds further complexity to the issue.
Again, identifying this potential loophole underscores why the full range of certifications matter, so that a grass-fed whey protein isolate isn’t slipping under the radar simply because you’re assuming that the cows at the dairy were not raised on non-GMO grasses without evidence.
Clean Label Project Certification
Once we arrive at Clean Label Project certification, we’re now dealing with the ugly truth of food production, and the realization that things are not always as they seem, particularly when it comes to the creation of dietary supplements.
No matter how healthy a grass-fed whey protein isolate or organic plant-based protein powder is stated to be, third-party testing cuts through all of that and reveals the hidden, harmful ingredients that go unreported on protein powder labels, and which might eventually prove to be catastrophic to your long term health.
The CLP’s 2025 report on protein powder revealed how certain protein powders that are thought to be healthy may actually be quite harmful, even if they can deliver on their promise to build lean muscle mass and assist you with muscle recovery.
Flying counter to what most people would suspect, 79 percent of organic protein powders — even including some that were presumed to have been extremely healthy like grass-fed whey protein powder or organic vegan protein powder — were found to contain high levels of contaminants.
This also included the finding that supplements labeled to have chocolate flavor were far more likely to contain contaminants than supplements with other flavors. This discovery revealed the previously undisclosed danger that a protein powder with a chocolate peanut butter flavor would be significantly more likely to contain contaminants than a protein powder with a standard vanilla flavor.
For what it’s worth, part of the reason for this was the fact that the number of plant-based protein powders that tested positive for the presence of contaminants was frighteningly high, revealing that the soil content in which products like organic pea protein are produced is more likely than not to be high in pollutants, and especially cadmium.
Again, no matter how healthy a protein powder claims to be, CLP certification — along with publicly disclosed test results — is a surer sign that a protein powder that is presumably clean is actually living up to its advertising claims after you dump it into your shaker bottle and pour it into your mouth.
Gluten-Free or Dairy-Free Labeling
When it comes to selecting a clean protein powder, you may have an even higher standard than most people due to a specific food sensitivity or allergy — and most notably dairy allergies. In your case, it may actually be a requirement for your protein powder to be gluten free or dairy free, in addition to meeting all of the other conditions that are commonly associated with clean protein powder.
The best protein powder is going to vary from person to person based on personal taste, but the right protein powder could never be one that will leave you feeling less healthy than before you consumed it. So if your favorite plant protein absolutely has to be gluten-free for the sake of your health, do yourself a favor and ensure that the label states so.
5. How to Evaluate Your Protein Powder Label
Now that you’re aware of all the potential hazards that might be lurking within your cherished protein powder, how should you actually go about sizing it up for danger?
In order to help you evaluate the cleanliness of any protein powder — from whey protein to pea protein, and anything in between — here is a checklist that you should compare your protein powder against before you trust it enough to let it within even a foot of the unsweetened almond milk inside your shaker bottle.
Can you identify each ingredient?
Obviously, grass-fed whey protein isolate should be the primary ingredient in your grass-fed whey protein. From there, the rest of the ingredients on the label can be an absolute crapshoot with regard to their suitability for human consumption.
Being able to identify ingredients like cocoa powder, salt, and sunflower lecithin should set your mind at ease that you’re not dumping a bunch of unnatural, lab-made chemical compounds into your shaker bottle, and then assuming that it won’t have any negative consequences on your health.
Is the protein source listed clearly?
Sometimes a protein powder may list a “protein blend” under its ingredients without disclosing the actual protein source. In those cases, the protein content of your protein shake may come from anything, including sources that you would prefer to avoid if you knew they were in there.
To ensure that you’re getting what you’re hoping for out of protein powder, look for ingredients like whey protein isolate, pea protein isolate, and other protein content that is clearly identified. That way, there will be fewer unwelcome surprises.
What kind of sweetener is used, if any?
Added sugars may not be preferential, but even they might be preferable to artificial sweeteners if you have a particularly sensitive stomach, or want to avoid any of the unknown long term consequences of consuming substances like sucralose and aspartame.
No matter what your preference or tolerance for sweeteners in your protein powder might be, at least make sure you’re aware of precisely what is contained therein. It’s possible that the gastrointestinal distress that you’ve been dealing with for months on end has been caused by a sensitivity to an artificial sweetener that had gone totally unaccounted for within your whey protein powder.
Are macros clearly presented?
The entire point of consuming a protein powder in the first place is to get the appropriate amount of protein per serving in alignment with your fitness goals, and the corresponding number of essential amino acids needed to assist with muscle recovery and promote muscle growth.
In addition to helping you tap into an adequate protein source, a worthwhile protein powder will usually include healthy fats to help with protein digestion, along with some carbohydrate content to assist with muscle protein synthesis.
You might be under the assumption that your protein powder is assisting your body with these processes, but unless every macronutrient is clearly accounted for on the product’s label, you’ll never know.
Does the company share 3rd party testing info?
All certifications aside, the only true way to know if your grass-fed whey protein isolate is every bit as pure as it claims to be is if the manufacturer is willing to share its independent, unbiased third-party testing info.
Aside from this being the manufacturer’s opportunity to disclose that it truly does offer a high quality protein powder by displaying the supplement equivalent of a clean bill of health, it also puts your mind at ease that the company isn’t hiding anything else that’s harmful within its formula.
This even includes banned substances, or other hidden ingredients that a disreputable manufacturer might sneak into a product to give it the appearance of being a more impressive muscle-mass-builder or fat-shredder than it truly is.
Some people may welcome this sort of unexpected muscle gain at all costs, but the physical downsides to resorting to hormonal enhancements to accelerate muscle growth and weight loss are well documented, with steroid use even becoming associated with “deviant brain aging.” (4)
More often than not, the sort of supplement-takers who would be interested in a clean whey isolate for purity reasons are also unlikely to want a hidden hormonal boost slipped into their whey protein powder for the sake of experience.

6. The Rise of Grass-Fed and Naturally Sweetened Options
Now that you have all of the information needed to make a clean protein powder purchasing decision, you might be wondering why products like grass-fed whey protein isolate and organic plant protein came from in the first place. The truth is that there are several factors that set the stage for their eventual creation.
Growing consumer demand for clean, ethical sourcing.
With awareness spreading about the intricacies of the food production process, many people have insisted that food manufacturers revert to processes that minimize the risks of consumer harm, and encourage the development of food creation methods that prioritize ethical sourcing, with end products that minimize the extent of the modification undergone by the original food item.
When it comes to something like grass-fed whey protein isolate, the finished product should ideally represent a combination of minimally processed whey protein created from the milk of cows that have consumed only non-GMO grasses, and other natural ingredients that you could easily purchase off the shelves of a local supermarket.
Benefits of Grass-fed Dairy Protein
Aside from using grass-fed whey protein isolate as a major source of protein intake simply because it sounds healthier than popular alternatives, further investigation supports this belief with actual facts about its healthier content.
On average, grass-fed whey protein contains higher levels of certain fats — like omega 3 fatty acids and conjugated linoleic acid — along with higher levels of vitamin A and vitamin 2. Therefore, the consumption of grass-fed whey protein isolate rather than a garden-variety whey protein concentrate is justified by the proven differences in nutritional content.
Fewer additives means better digestibility for many users.
It goes without saying that no one is going out of their way to purchase protein powder for its additives. Yes, they may favor a specific flavor, but even if their protein source of choice was unavailable in a sea salt caramel variation, they would probably still consume a protein powder for the sake of getting the essential amino acids that spur muscle growth.
In keeping with this, most consumers of protein powder are prioritizing their comfort during the pursuit of their goals. So whether the protein powder is being taken in service of a weight loss objective or a muscle growth goal, the person purchasing it doesn't want to have their comfort disrupted by a hiccup in the digestive process. For this reason and others, many consumers prefer a clean protein source for the sake of avoiding additives and maximizing digestive discomfort.
Why minimalism is trending in the supplement world.
Across the fitness world, serious athletes and other training enthusiasts are beginning to take a far more minimalist approach to supplementation out of a desire to take total ownership of what goes into their bodies.
With improvements in performance at the highest levels of competition becoming increasingly more dependent upon the small details, athletes now demand the ability to take stock of everything that enters their systems. This way, they can more easily make adjustments, additions, and subtractions, and gauge the outcomes of those decisions.
In the case of a clean protein source, an athlete can easily account for everything that’s in it, and make modifications on intake based on how quickly goals like increased strength and weight loss are achieved.
A quick reminder of how protein works
With all of this discussion about what the best protein powder is, it can be helpful to have a refresher of what the routine ingestion of protein powder is intended to accomplish.
Muscle Composition
Your muscles are composed of individual muscle fibers, which are made of myofibrils, which are themselves composed of proteins. Even under non-exercise conditions, your body would still require dietary protein — which is composed of collections of amino acids — in order to maintain the basic functionality of your body.
Amino Acids
The building blocks of dietary proteins are amino acids. There are nine essential amino acids that your body can’t make on its own, and that you are required to get from dietary sources. A protein source that contains all nine essential amino acids is called a complete protein source.
It’s important to note that not every complete protein source is created equal, and that’s because some amino acids are more crucial to tissue growth and repair, and the corresponding muscle gain than others.
For example, the branched chain amino acids — leucine, isoleucine, and valine — are more essential to muscle growth and gain than others. Therefore, if your complete protein source has all nine essential amino acids but is low on branched chain amino acids, you may find it worthwhile to separately acquire BCAAs from a separate supplement source.
At least one study indicated that pea and soy protein needed to be fortified with the BCAA leucine in order to produce levels of muscle protein synthesis at a level comparable to that of whey. (5)
For what it’s worth, most supplemental protein sources have complete amino acid profiles and are also high in BCAAs, but sometimes analysis needs to be done. For example, one of the key differences between whey protein powders and casein powders — both of which are derived from dairy milk — is that whey protein has more branched chain amino acids than casein protein despite both having a complete amino acid profile.
Post-Workout Tissue Repair
When you exercise — and especially when you use the principles of structured resistance training — you break down your muscle fibers, causing microtears in those fibers. When that happens, your muscle fibers need to be rebuilt in a stronger form in order to replicate and surpass the effort the next time around.
In order to accomplish this, your body uses the amino acids from essential protein to complete the repairs to your muscles, enabling them to grow, and return in a stronger form the next time you pick up a set of weights.
It’s for this reason that protein powder — and ideally clean protein powder — is a perfect post-workout meal. It rapidly provides your muscles with the nutrients they require so that you can return to the gym stronger, and prepared for an even more strenuous and productive training session the next time around.
Becoming a Clean Machine
When you get right down to it, a clean protein powder truly matches the expectation that comes with the description of protein powder. It’s protein powder in a palatable, tolerable, and beneficial form, without a bunch of other added sugars, unnatural sweeteners, unnecessary ingredients, and harmful contaminants.
In other words, it’s the only protein powder that provides you with all of the benefits that you are expecting when you scoop it out, mix it up, and drink it, and none of the negative side effects that no rational person would ever have expected to get blindsided by in the first place. In essence, the best protein powder is always going to be clean, because nothing else captures the essence of what a true protein powder was intended to be.
Sources
-
Ghusn W, Naik R, Yibirin M. The Impact of Artificial Sweeteners on Human Health and Cancer Association: A Comprehensive Clinical Review. Cureus. 2023 Dec 29;15(12):e51299. doi: 10.7759/cureus.51299. PMID: 38288206; PMCID: PMC10822749.
-
Ruiz-Ojeda FJ, Plaza-Díaz J, Sáez-Lara MJ, Gil A. Effects of Sweeteners on the Gut Microbiota: A Review of Experimental Studies and Clinical Trials. Adv Nutr. 2019 Jan 1;10(suppl_1):S31-S48. doi: 10.1093/advances/nmy037. Erratum in: Adv Nutr. 2020 Mar 1;11(2):468. doi: 10.1093/advances/nmz112. PMID: 30721958; PMCID: PMC6363527.
-
Miller MD, Steinmaus C, Golub MS, Castorina R, Thilakartne R, Bradman A, Marty MA. Potential impacts of synthetic food dyes on activity and attention in children: a review of the human and animal evidence. Environ Health. 2022 Apr 29;21(1):45. doi: 10.1186/s12940-022-00849-9. PMID: 35484553; PMCID: PMC9052604.
-
Astrid Bjørnebekk, Tobias Kaufmann, Lisa E. Hauger, Sandra Klonteig, Ingunn R. Hullstein, Lars T. Westlye, Long-term Anabolic–Androgenic Steroid Use Is Associated With Deviant Brain Aging, Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, Volume 6, Issue 5, 2021, Pages 579-589, ISSN 2451-9022, https://doi.org/10.1016/j.bpsc.2021.01.001.
-
Dijk FJ, van Dijk M, Roberts J, van Helvoort A, Furber MJW. Pea and soy fortified with leucine stimulates muscle protein synthesis comparable to whey in a murine ageing model. Eur J Nutr. 2024 Nov 21;64(1):12. doi: 10.1007/s00394-024-03506-8. PMID: 39567431; PMCID: PMC11579064.